SNP Profiles matching UF 712

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 Key

 1234567891011121314
_Input profile
CCAACCGGTTCCCCAACCTTAAGGAACC
1._UF_712
CCAACCGGTTCCCCAACCTTAAGGAACC
2._UF_712
CCAACCGGTTCCCCAACCTTAAGGAACC
3._GC-01-089-5-06
CCAACCGGTTCCCCAACCTTAAGGAACC
4._GC-01-089-5-06
CCAACCGGTTCCCCAACCTTAAGGAACC
5._GC-01-089-5-06
CCAACCGGTTCCCCAACCTTAAGGAACC
6._UF_712
CCAACCGGTTCCCCAACCTTAAGGAACC
7._GC-01-089-5-06
CCAACCGGTTCCCCAACCTTAAGGAACC
8._RUQ_1638
__CCGGTTCCCCAACCTT_GGAACC
9._RUQ_1683
__CCGGTTCCCCAACCTT_GGAACC
10._RUQ_1638
CCAACCGGTTCCCCAACCTTAAGGAACC
11._RUQ_1638
CCAACCGGTTCCCCAACCTTAAGGAACC
12._UF_712
CCAACCGGTTCCCCAACCTTAAGGAACC
13._RUQ_1379
__CCGGTTCCCCAACCTT_GGAACC
14._RUQ_469
__CCGGTTCCCCAACCTT_GGAACC
15._LCT_EEN_90
CCAACCGGTTCCGGAACCTTAAGGACCC
16._LCT_EEN_90
CCAACCGGTTCCGGAACCTTAAGGACCC
17._LCT_EEN_90
CCAACCGGTTCCGGAACCTTAAGGACCC
18._LCT_EEN_90
CCAACCGGTTCCGGAACCTTAAGGACCC
19._LCT_EEN_90
CCAACCGGTTCCGGAACCTTAAGGACCC
20._LCT_EEN_90
CCAACCGGTTCCGGAACCTTAAGGACCC
21._LCT_EEN_90
CCAACCGGTTCCGGAACCTTAAGGACCC
22._LCT_EEN_90
CCAACCGGTTCCGGAACCTTAAGGACCC
23._LCT_EEN_90
CCAACCGGTTCCGGAACCTTAAGGACCC
24._LCT_EEN_90
CCAACCGGTTCCGGAACCTTAAGGACCC
25._GC-08-089-2-12
CCAACCGGTTCCGGAACCTTAAGGACCC
26._GC-08-089-2-12
CCAACCGGTTCCGGAACCTTAAGGACCC
27._GC-08-089-2-12
CCAACCGGTTCCGGAACCTTAAGGACCC
28._GC-08-089-2-12
CCAACCGGTTCCGGAACCTTAAGGACCC
29._GC-08-089-2-12
CCAACCGGTTCCGGAACCTTAAGGACCC
30._GC-08-089-2-12
CCAACCGGTTCCGGAACCTTAAGGACCC
31._GC-08-089-2-12
CCAACCGGTTCCGGAACCTTAAGGACCC
32._GC-08-089-2-12
CCAACCGGTTCCGGAACCTTAAGGACCC
33._GC-08-089-2-12
CCAACCGGTTCCGGAACCTTAAGGACCC
34._GC-08-089-2-12
CCAACCGGTTCCGGAACCTTAAGGACCC
35._POUND_10
CCAACCGGTTCCGGAACCTTAAGGACCC
36._POUND_10
CCAACCGGTTCCGGAACCTTAAGGACCC
37._POUND_10
CCAACCGGTTCCGGAACCTTAAGGACCC
38._GC-05-069-2-20
CCAACCGGTTCCGGAACCTTAAGGACCC
39._GC-05-069-2-20
CCAACCGGTTCCGGAACCTTAAGGACCC
40._GC-05-069-2-20
CCAACCGGTTCCGGAACCTTAAGGACCC
41._LCT_EEN_90
CCAACCGGTTCC-AACCTTAAGGACCC
42._LCT_EEN_90
CCAACCGGTTCC_AACCTTAAGGACCC
43._UF_712
CCAACCGGTTCCCC_CCTTAAGGAACC
 1516171819202122232425262728
_Input profile
GGGGCCCTAAGGGGTTCCGGTTTTAACC
1._UF_712
GGGGCCCTAAGGGGTTCCGGTTTTAACC
2._UF_712
GGGGCCCTAAGGGGTTCCGGTTTTAACC
3._GC-01-089-5-06
GGGGCCCTAAGGGGTTCCGGTTTTAACC
4._GC-01-089-5-06
GGGGCCCTAAGGGGTTCCGGTTTTAACC
5._GC-01-089-5-06
GGGGCCCTAAGGGGTTCCGGTTTTAACC
6._UF_712
GGGGCCCTAAGGGGTTCCGGTTTTAACC
7._GC-01-089-5-06
GGGGCCCTAAGGGGTTCCGGTTTTAACC
8._RUQ_1638
GGGGCCCT_GGGGTT____AACC
9._RUQ_1683
GGGGCCCT_GGGGTT____AACC
10._RUQ_1638
GGGGCCCTGGGGGGTTCCGGTTTTAACC
11._RUQ_1638
GGGGCCCTGGGGGGTTCCGGTTTTAACC
12._UF_712
GGGGCCCTGGGGGGTTCC_TTTTAACC
13._RUQ_1379
GTGGCCCT_GGGGTT____AACC
14._RUQ_469
GTGGCCCT_GGGGTT____AACC
15._LCT_EEN_90
GGGGCCCTAAGGGGTTCCGGTTTTAACC
16._LCT_EEN_90
GGGGCCCTAAGGGGTTCCGGTTTTAACC
17._LCT_EEN_90
GGGGCCCTAAGGGGTTCCGGTTTTAACC
18._LCT_EEN_90
GGGGCCCTAAGGGGTTCCGGTTTTAACC
19._LCT_EEN_90
GGGGCCCTAAGGGGTTCCGGTTTTAACC
20._LCT_EEN_90
GGGGCCCTAAGGGGTTCCGGTTTTAACC
21._LCT_EEN_90
GGGGCCCTAAGGGGTTCCGGTTTTAACC
22._LCT_EEN_90
GGGGCCCTAAGGGGTTCCGGTTTTAACC
23._LCT_EEN_90
GGGGCCCTAAGGGGTTCCGGTTTTAACC
24._LCT_EEN_90
GGGGCCCTAAGGGGTTCCGGTTTTAACC
25._GC-08-089-2-12
GGGGCCCTAAGGGGTTCCGGTTTTAACC
26._GC-08-089-2-12
GGGGCCCTAAGGGGTTCCGGTTTTAACC
27._GC-08-089-2-12
GGGGCCCTAAGGGGTTCCGGTTTTAACC
28._GC-08-089-2-12
GGGGCCCTAAGGGGTTCCGGTTTTAACC
29._GC-08-089-2-12
GGGGCCCTAAGGGGTTCCGGTTTTAACC
30._GC-08-089-2-12
GGGGCCCTAAGGGGTTCCGGTTTTAACC
31._GC-08-089-2-12
GGGGCCCTAAGGGGTTCCGGTTTTAACC
32._GC-08-089-2-12
GGGGCCCTAAGGGGTTCCGGTTTTAACC
33._GC-08-089-2-12
GGGGCCCTAAGGGGTTCCGGTTTTAACC
34._GC-08-089-2-12
GGGGCCCTAAGGGGTTCCGGTTTTAACC
35._POUND_10
GGGGCCCTAAGGGGTTCCGGTTTTAACC
36._POUND_10
GGGGCCCTAAGGGGTTCCGGTTTTAACC
37._POUND_10
GGGGCCCTAAGGGGTTCCGGTTTTAACC
38._GC-05-069-2-20
GGGGCCCTAAGGGGTTCCGGTTTTAACC
39._GC-05-069-2-20
GGGGCCCTAAGGGGTTCCGGTTTTAACC
40._GC-05-069-2-20
GGGGCCCTAAGGGGTTCCGGTTTTAACC
41._LCT_EEN_90
GGGGCCCTGGGGGGTTCCGGTTTTAACC
42._LCT_EEN_90
GGGGCCCTGGGGGGTTCCGGTTTTAACC
43._UF_712
GGGGTTCTGGGGGGTTCC_TTTTAACC
 2930313233343536373839   
_Input profile
GGTTCCCCGGTTCCTTCCGGCCX_XX_XX_X
1._UF_712
GGTTCCCCGGTTCCTTCCGGCCX_XX_XX_X
2._UF_712
GGTTCCCCGGTTCCTTCCGGCCX_XX_XX_X
3._GC-01-089-5-06
GGTTCCCCGGTTCCTTCCGGCCX_XX_XX_X
4._GC-01-089-5-06
GGTTCCCCGGTTCCTTCCGGCCX_XX_XX_X
5._GC-01-089-5-06
GGTTCCCCGGTTCCTTCCGGCCX_XX_XX_X
6._UF_712
GGTTCCCCGGTTCCTT_GGCCX_XX_XX_X
7._GC-01-089-5-06
GGTTCCCCGGTTCCTT_GGCCX_XX_XX_X
8._RUQ_1638
____GG__TTCCGG_X_XX_XX_X
9._RUQ_1683
____GG__TTCCGG_X_XX_XX_X
10._RUQ_1638
GGATCCCCGGTTCCTTCCGGCCX_XX_XX_X
11._RUQ_1638
GGATCCCCGGTTCCTTCCGGCCX_XX_XX_X
12._UF_712
GGATCCCCGGTTCCTTCCGGCCX_XX_XX_X
13._RUQ_1379
____GT__TTCCGG_X_XX_XX_X
14._RUQ_469
____GT__TTCCGG_X_XX_XX_X
15._LCT_EEN_90
GGTTCCCTGGTTCCTTCCGGCCX_XX_XX_X
16._LCT_EEN_90
GGTTCCCTGGTTCCTTCCGGCCX_XX_XX_X
17._LCT_EEN_90
GGTTCCCTGGTTCCTTCCGGCCX_XX_XX_X
18._LCT_EEN_90
GGTTCCCTGGTTCCTTCCGGCCX_XX_XX_X
19._LCT_EEN_90
GGTTCCCTGGTTCCTTCCGGCCX_XX_XX_X
20._LCT_EEN_90
GGTTCCCTGGTTCCTTCCGGCCX_XX_XX_X
21._LCT_EEN_90
GGTTCCCTGGTTCCTTCCGGCCX_XX_XX_X
22._LCT_EEN_90
GGTTCCCTGGTTCCTTCCGGCCX_XX_XX_X
23._LCT_EEN_90
GGTTCCCTGGTTCCTTCCGGCCX_XX_XX_X
24._LCT_EEN_90
GGTTCCCTGGTTCCTTCCGGCCX_XX_XX_X
25._GC-08-089-2-12
GGTTCCCTGGTTCCTTCCGGCCX_XX_XX_X
26._GC-08-089-2-12
GGTTCCCTGGTTCCTTCCGGCCX_XX_XX_X
27._GC-08-089-2-12
GGTTCCCTGGTTCCTTCCGGCCX_XX_XX_X
28._GC-08-089-2-12
GGTTCCCTGGTTCCTTCCGGCCX_XX_XX_X
29._GC-08-089-2-12
GGTTCCCTGGTTCCTTCCGGCCX_XX_XX_X
30._GC-08-089-2-12
GGTTCCCTGGTTCCTTCCGGCCX_XX_XX_X
31._GC-08-089-2-12
GGTTCCCTGGTTCCTTCCGGCCX_XX_XX_X
32._GC-08-089-2-12
GGTTCCCTGGTTCCTTCCGGCCX_XX_XX_X
33._GC-08-089-2-12
GGTTCCCTGGTTCCTTCCGGCCX_XX_XX_X
34._GC-08-089-2-12
GGTTCCCTGGTTCCTTCCGGCCX_XX_XX_X
35._POUND_10
GGTTCCCTGGTTCCTTCCGGCCX_XX_XX_X
36._POUND_10
GGTTCCCTGGTTCCTTCCGGCCX_XX_XX_X
37._POUND_10
GGTTCCCTGGTTCCTTCCGGCCX_XX_XX_X
38._GC-05-069-2-20
GGTTCCCTGGTTCCTTCCGGCCX_XX_XX_X
39._GC-05-069-2-20
GGTTCCCTGGTTCCTTCCGGCCX_XX_XX_X
40._GC-05-069-2-20
GGTTCCCTGGTTCCTTCCGGCCX_XX_XX_X
41._LCT_EEN_90
GGTT-CTGGTTCCTTCCGGCCX_XX_XX_X
42._LCT_EEN_90
GGTT_CTGGTTCCTTCCGGCCX_XX_XX_X
43._UF_712
GGATCCCCGGTTCCTTCCGGCCX_XX_XX_X

Input profile: UF_712

 
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Mars Center for Cocoa Science, Brazil
Location: 1506 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

1._UF_712

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1506 2
 Dapeng Zhang, 2016

2._UF_712

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1506 4
 Dapeng Zhang, 2016

3._UF_712 GC-01-089-5-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

4._UF_712 GC-01-089-5-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._UF_712 GC-01-089-5-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

6._UF_712

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1506 3
 Dapeng Zhang, 2016

7._UF_712 GC-01-089-5-06

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

8._UF_712 RUQ_1638

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

9._UF_712 RUQ_1683

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

10._UF_712 RUQ_1638

96.2 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

11._UF_712 RUQ_1638

96.2 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

12._UF_712

96.1 %
38 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

13._AM_1_/57_[POU] RUQ_1379

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._AM_1_/8_[POU] RUQ_469

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

15._LCT_EEN_90

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 4 > FP
 Dapeng Zhang, 2016

16._LCT_EEN_90

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 3 > FP
 Dapeng Zhang, 2016

17._LCT_EEN_90

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 2 > FP
 Dapeng Zhang, 2016

18._LCT_EEN_90

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 1 > FP
 Dapeng Zhang, 2016

19._LCT_EEN_90

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 10
 Dapeng Zhang, 2016

20._LCT_EEN_90

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 9
 Dapeng Zhang, 2016

21._LCT_EEN_90

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 8
 Dapeng Zhang, 2016

22._LCT_EEN_90

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 7
 Dapeng Zhang, 2016

23._LCT_EEN_90

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 6
 Dapeng Zhang, 2016

24._LCT_EEN_90

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8212 5
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

25._LCT_EEN_90 GC-08-089-2-12

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

26._LCT_EEN_90 GC-08-089-2-12

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

27._LCT_EEN_90 GC-08-089-2-12

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

28._LCT_EEN_90 GC-08-089-2-12

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

29._LCT_EEN_90 GC-08-089-2-12

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

30._LCT_EEN_90 GC-08-089-2-12

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

31._LCT_EEN_90 GC-08-089-2-12

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

32._LCT_EEN_90 GC-08-089-2-12

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

33._LCT_EEN_90 GC-08-089-2-12

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

34._LCT_EEN_90 GC-08-089-2-12

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

35._POUND_10

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5220 3
 Dapeng Zhang, 2016

36._POUND_10

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5220 1 > FP
 Dapeng Zhang, 2016

37._POUND_10

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5220 4 > FP
 Dapeng Zhang, 2016

38._POUND_10 GC-05-069-2-20

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

39._POUND_10 GC-05-069-2-20

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

40._POUND_10 GC-05-069-2-20

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

41._LCT_EEN_90

94.6 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 143 T3
 Dapeng Zhang, 2014

42._LCT_EEN_90

94.6 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 143 T3
 Dapeng Zhang, 2016

43._UF_712

93.2 %
37 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: La Montaña Lot 6 Row 39 34_36
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1414
36TcSNP1442 37TcSNP1458 38TcSNP1484 39TcSNP1520